DreEX0022111 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66558808-66563407:-
Coord C1 exon
chr5:66563174-66563407
Coord A exon
chr5:66560843-66561342
Coord C2 exon
chr5:66558808-66558932
Length
500 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTCTCCATGACAGGTG
3' ss Score
11.71
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AGTCATCGCTGCACAGTGTTTTCCCTCCTTTGTTTTTTATTTATAAATTTTTTTCGTTCAACGCTGTTGCTCCAACCTTAACAGTCAATGTTTGTTGGAGAGGACAACTGCAAGTATAGACTGACAGCCATTTTAGAGGAAAAATGAGTACCTCAAAGCCCAGTGGACTAAAAGCACCCAGCAAAATTGGTCGACCAGCCAATACTGGGCCCACGAAGACGTCACCTTCTGCTG
Seq A exon
GTGCTTCAAAAGCAGCTCAAAGTGACAAATCCTCAGCTGAAGCTCCAGATGCAGGAGAGCAGTTCAAGGTTGGGGATCGTGTCTGGGTAAACGGCAACAAACCTGGCGTAGTTCAGTTTTTAGGAGAGACGCAGTTTGCTCCGGGGCAGTGGGCTGGCATTGTGCTGGATGAGCCGATCGGGAAAAATGACGGCTCGGTGTCAGGCGTGCGTTATTTTCAGTGTGAAGCGTTAAGGGGTATTTTCACACGTCCTTCCAAGCTCTCAAGCACAGAAGGTGAAGCGGACGGTACGACAACAGCTCCTCCGTCCCGTGCTGCTTCACCCACCCCATCCACCACATCAGTGTCCGCTTCATCCAAGAAACCAGCATCACCCACTAAAGCTGCAGCACCAACCTCAGATCTGGTGCGGTCCAAAAGTGAGTCGGTGTCCAATCTGTCCGAGAGCGGTTCTGTCAAGAAAGGGGAACGGGAGCTGAAGATCAACGATCGAGTGCTG
Seq C2 exon
GTTGCTGGCTCAAAAGCTGGCGTGGTGCGTTTCTTAGGGGAAACTGATTTTGCCAAGGGTGAGTGGTGTGGAGTTGAGCTGGATGAGCCCTTGGGGAAGAACGATGGAGCTGTGGCTGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.778 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=39.5),PF0130220=CAP_GLY=PU(7.6=3.0)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATCGCTGCACAGTGTTT
R:
CACAGCTCCATCGTTCTTCCC
Band lengths:
348-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]