RnoEX0021783 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38375308-38383666:+
Coord C1 exon
chr12:38375308-38375500
Coord A exon
chr12:38378856-38379424
Coord C2 exon
chr12:38383542-38383666
Length
569 bp
Sequences
Splice sites
3' ss Seq
CATTCTTCTTTTGCATTCAGCTG
3' ss Score
7.96
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACTTAACCAAGAGACTAAGTTCTCTATAGAAACACCCACATTTGTATGGATGATTGGGGAAAGATAGTGGCAGCAGACAAGGGAAAAGCATCCTGACCTTCCGAGAAAATGAGTATGCTGAAACCCAGCGGGCTGAAGGCCCCGACCAAGATCCTAAAGCCTGGGAGCACAGCCTTGAAGACCCCTGCTGCTG
Seq A exon
CTGCAGCTCCATTGGAGAAGACAGTACCCAGTGAAAAAGCCTCAGGCCCTCCATCCTCTGAGACCCAAGAGGAGTTTGTGGACGACTTCCGAGTTGGAGAACGTGTTTGGGTGAACGGGAATAAACCTGGATTTATCCAGTTTCTTGGGGAAACTCAGTTTGCACCAGGCCAGTGGGCTGGTATTGTTTTGGATGAACCCATAGGAAAGAACGACGGCTCAGTGGCAGGAGTGCGGTATTTCCAGTGTGAGCCTTTAAAGGGCATCTTCACCCGACCGTCAAAGCTAACGAGGAAGGTACAAGCAGAGGATGAAGCCAACGGCCTGCAGACAGCTCACGCGAGAGCTGCTTCACCTCTGTCCACTGCTGCAGCCACCATGGTGTCCTCTTCTCCAGCCACTCCCTCAAATATTCCCCAGAAACCGTCCCAGCCAGTGGCAAAAGAAACTTCAGCGACACCTCAAATTAGCAACCTTACGAAAACCGCCAGCGAGTCAATCTCCAACCTTTCAGAGGCTGGCTCTGTCAAGAAGGGAGAGCGAGAGCTCAAGATCGGAGACAGGGTGCTG
Seq C2 exon
GTCGGTGGCACGAAGGCTGGCGTGGTCCGGTTTCTTGGAGAGACTGACTTCGCCAAGGGGGAGTGGTGTGGTGTGGAATTGGACGAACCTTTGGGGAAGAACGACGGTGCTGTTGCTGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'12-7,'12-6,14-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.591 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=34.7),PF0130220=CAP_GLY=PU(7.6=2.6)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAACCAAGAGACTAAGTTCTCT
R:
CTTGTTCCAGCAACAGCACCG
Band lengths:
318-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]