BtaEX0009240 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55275946-55292068:+
Coord C1 exon
chr17:55275946-55276140
Coord A exon
chr17:55280382-55280953
Coord C2 exon
chr17:55291944-55292068
Length
572 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTCTTCTGTTTGCAGTTG
3' ss Score
9.44
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
ACTTAACCCAGAGACTGACTTCACTATAGAATCACCCACAGTTGTATCCATGACTGGGGAAAGATAGTGGCAACAGGCAGAGGAGAAGCAGCTCTGACACACAGAAGACAATGAGTATGCTAAAACCAAGCGGGCTTAAGGCCCCCACCAAGATTCTGAAGCCTGGAAGCACAGCCTTGAAGACGCCTGCTGCTG
Seq A exon
TTGCTGCTCCAATAGAAAAAACAATATCCAGTGAAAAAGCATCAAGCACTCTGTCCTCTGAGACACAAGAGGAGTTTGTGGATGACTTTCGAGTTGGGGAGCGAGTTTGGGTGAATGGGAATAAGCCTGGATTTATCCAGTTCCTGGGAGAAACACAGTTTGCACCAGGCCAGTGGGCCGGGATCGTTTTGGATGAGCCCATAGGCAAGAATGATGGCTCAGTAGCAGGAGTTCGGTACTTCCAGTGTGAGCTTCTAAAGGGGATATTTACCCGACCTTCAAAGTTGACGAGGAAGGTGCAGGCAGAGGATGAAGCTGATGGCCCGCAGACGCCTCACGCTTCCAGGGCGACTTCGTCTCTGTCCACTTCGGGAATCAGCATGGCGTCCTCGTCTCCAGCCACCCCCTCAAATATTCCCCACAAATCATCCCAACCAACCGCAAAGGAACCTTCAGCTACATCTCAGATCAGCAACCTTACGAAAACCGCCAGCGAATCTATCTCCAACCTTTCAGAGGCCGGCTCAATCAAGAAAGGAGAGAGAGAACTCAAAATCGGAGACCGAGTACTG
Seq C2 exon
GTTGGTGGCACGAAGGCCGGTGTAGTCCGGTTTCTTGGGGAGACAGACTTCGCCAAGGGGGAGTGGTGTGGCGTGGAGTTGGATGAGCCTCTTGGGAAGAACGACGGGGCTGTTGCTGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.492 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=34.6),PF0130220=CAP_GLY=PU(7.6=2.6)
C2:
PF0130220=CAP_GLY=FE(62.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAACCCAGAGACTGACTTCAC
R:
CTTGTTCCAGCAACAGCCCC
Band lengths:
320-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development