MmuEX0012140 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61860440-61862771:-
Coord C1 exon
chr10:61862628-61862771
Coord A exon
chr10:61862015-61862113
Coord C2 exon
chr10:61860440-61860484
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTGTCAATCTATAGGGT
3' ss Score
7.28
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GGGCCTCGAGGAAAACCAGGAGATATGGGGCCGGCTGGTCCTCAAGGACCCCCAGGAAAGGATGGGCCTCCAGGAATGAAGGGAGAAGTCGGACCCCCAGGAAGTCCAGGGGAGAAAGGGGAGACAGGACAAGCAGGCCCCCAG
Seq A exon
GGTCTAGACGGCCCAACTGGGGAGAAAGGAGAACCAGGTGACGAAGGGAGGCCTGGAGCGACAGGATTGCCTGGGCCCATCGGGCTCCCGGGATTCACA
Seq C2 exon
GGAGAGAAAGGAGAAGCTGGGGAGAAAGGCGACCCGGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806_MULTIEX4-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(36.7=45.8),PF0139113=Collagen=PU(71.0=91.7)
A:
PF0139113=Collagen=PD(42.3=90.9),PF0139113=Collagen=PU(29.4=60.6)
C2:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGAGGAAAACCAGGAGA
R:
CCTTTCTCCCCAGCTTCTCCT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types