MmuEX0012140 @ mm9
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61323188-61325519:-
Coord C1 exon
chr10:61325376-61325519
Coord A exon
chr10:61324763-61324861
Coord C2 exon
chr10:61323188-61323232
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTGTCAATCTATAGGGT
3' ss Score
7.28
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GGGCCTCGAGGAAAACCAGGAGATATGGGGCCGGCTGGTCCTCAAGGACCCCCAGGAAAGGATGGGCCTCCAGGAATGAAGGGAGAAGTCGGACCCCCAGGAAGTCCAGGGGAGAAAGGGGAGACAGGACAAGCAGGCCCCCAG
Seq A exon
GGTCTAGACGGCCCAACTGGGGAGAAAGGAGAACCAGGTGACGAAGGGAGGCCTGGAGCGACAGGATTGCCTGGGCCCATCGGGCTCCCGGGATTCACA
Seq C2 exon
GGAGAGAAAGGAGAAGCTGGGGAGAAAGGCGACCCGGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(37.7=47.9),PF0139113=Collagen=PU(57.9=91.7),PF0139113=Collagen=PU(9.1=16.7)
A:
PF0139113=Collagen=PD(42.3=90.9),PF0139113=Collagen=PU(29.4=60.6)
C2:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(0.1=0.0)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGAGGAAAACCAGGAGA
R:
CCTTTCTCCCCAGCTTCTCCT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: