BtaEX0009571 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011741 | COL13A1
Description
Bos taurus collagen, type XIII, alpha 1 (COL13A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105433]
Coordinates
chr28:26376472-26378624:+
Coord C1 exon
chr28:26376472-26376624
Coord A exon
chr28:26377163-26377261
Coord C2 exon
chr28:26378580-26378624
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGATCTTTGTCAATCCATAGGGT
3' ss Score
7.48
5' ss Seq
ATAGTAAGG
5' ss Score
4.33
Exon sequences
Seq C1 exon
GGACCTCGAGGCAAACCAGGAGATGTGGGCCCTCCTGGTCCCCAAGGCCCCCCAGGAAAGCCTGGGCCTGCAGGAATGAAGGGAGAAGACGGCCTCCCGGGGAGCCCAGGAGAGAAGGGGGAGAAAGGGGAGACGGGGCAGCCGGGACCACCG
Seq A exon
GGTCTAGACGGCCCAACTGGGGAGAAAGGAGAACCAGGTGACCAAGGGAGACCCGGAGCGACTGGACTTCCTGGCCCAATCGGGCTCCCAGGATTTATA
Seq C2 exon
GGAGAGAAAGGAGAACCAGGGGAGAAGGGTGACCCAGGAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011741_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(37.1=45.1),PF0139113=Collagen=FE(58.8=100),PF0139113=Collagen=PU(9.0=15.7)
A:
PF0139113=Collagen=PD(41.1=90.9),PF0139113=Collagen=PU(29.4=60.6)
C2:
PF0139113=Collagen=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAAACCAGGAGATGTGG
R:
CCTTCTCCCCTGGTTCTCCTT
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development