MmuEX0025172 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140507700-140513034:+
Coord C1 exon
chr1:140507700-140507849
Coord A exon
chr1:140509446-140509613
Coord C2 exon
chr1:140512821-140513034
Length
168 bp
Sequences
Splice sites
3' ss Seq
AAACATTTTGCTGAATCCAGGTC
3' ss Score
4.47
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
AGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACTTACGGGAGGTGCTCAGGAAACGAAGTCTATCACATCGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTTCATGCCCACAAAAA
Seq A exon
GTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGCATCATTGCCAGCATGG
Seq C2 exon
GTACTGTGGCTATAGACTTGCAAGACACAAGCTGCAGAGCAACAAGTGGCCCCACCCTGGCTCTTCCTTCAGAGGGAGGCAAAGAATTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTGGCAGATACATCATCAATTCAAACATGCGATCTCCTAAGTGACCAGTCCGAAGATGAAACTACACCAGATGAAGAAACATCTTCAAATTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'30-30,'30-29,31-30
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.134 C2=0.422
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(47.2=100)
A:
PF0349313=BK_channel_a=PD(14.5=10.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACTTACGGGAGGTGCTCA
R:
GCCACCTCTAAAACAGGAGCA
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types