GgaEX1031352 @ galGal4
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2763109-2765423:+
Coord C1 exon
chr8:2763109-2763258
Coord A exon
chr8:2764317-2764546
Coord C2 exon
chr8:2765207-2765423
Length
230 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTTTTCTAATTAAGGTT
3' ss Score
9.51
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AGAGAGTCAGCAATCATCAGAACAATGGCAGAAAATGTATGGCAGATGCTCTGGTAATGAAGTGTTTCACATTAACCTGGAAGAAAGTACTTTTTTTGCTGAATATGAAGGGAAAAGCTTCACATATGCTTCTTTCCATGCACATAAAAA
Seq A exon
GTTTGGAGTCTGTCTGATTGGTGTTAGAAAGGAAGATAACAAAAACATTTTGCTGAATCCAGGTCCTCGGTATATCATGAGTTCTACAGATATATGCTTTTATATAAATATCACCAAAGAAGAGAATTCTGCTTTCAAGAAGCAAGAAAAACACAGAAAAAGACATGAATCAAAGTTGTCTTATCATGGAGCTTCTAGGTTGCCTGTACACAGTATAATAGCCAGCATGG
Seq C2 exon
GAACTGTGGCTATTGATTTACAAGACACAGGATGCCGAACGTCCAGCGGACCTACGCTAGCTCTTCCTTCTGAGGGAGGTAAAGAGGGCAGACGGCCCAGTATAGCACCTGTTCTGGAGGTTGCAGACTCATCCTCACTTCAGGCATGTGACCTGCTAAGCGACCAGTCAGAAGATGAAACCACTCCATCTGATGACGAAGTCTCTGCAGGCTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'25-29,'25-27,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.179 C2=0.493
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(40.0=100)
A:
PF0349313=BK_channel_a=PD(7.2=11.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATCATCAGAACAATGGCA
R:
GGTCACATGCCTGAAGTGAGG
Band lengths:
296-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]