DreEX6082914 @ danRer10
Exon Skipping
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4732482-4737683:-
Coord C1 exon
chr21:4737526-4737683
Coord A exon
chr21:4735134-4735369
Coord C2 exon
chr21:4732482-4732692
Length
236 bp
Sequences
Splice sites
3' ss Seq
AAGAACTCTGTTGTGTTTAGGTA
3' ss Score
7.03
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TCTTTTAGAGAGGGCCAGCAGTCTCCGGAGCAGTGGCAGAGGATGTATGGTCGATGTTCGGGTAATGAGGTCTATCATATCCGCCTGGGTGACAGTATGTTCTTCAGGGAGTACAACAGCAAAAGCTTTACCTATGCTGCCTTTCACGCTCACAAAAA
Seq A exon
GTACGGTGTGTGTATGATTGGTGTGAAGAGAGAAGATAATAAGAGCATCTTGTTGAACCCTGGACCGCGACACATCATGTCTGCCAGCGACACCTGTTACTACATCAACATCACGAAAGAGGAAAACTCCGCCTTCATCTTCAGACAGGAGGAAGACCAGGGAAAGGGGCGGAGCCACTGCGACTTTTTAAACAGCCCGTCAGGACTACCTGTTCATAGCATTATTGCTAGCATGG
Seq C2 exon
GAACGGTTGCCATGGATTTTCAGAACACCAGTCCCACTGAGAGCGGACTCAAACTGGCTCCGCCCACAGAGAACGAACTGGGAAGTCGACGACCAAGTATAGCGCCCGTTTTGGAGATTGCTGACTCCACCTCCTTACTGCCGTGTGACCTGCTGAGCGACCAATCAGAGGACGAGGCCGGACACTCGAATGAAGATATTACAGCCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.126 C2=0.528
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(45.6=100)
A:
PF0349313=BK_channel_a=PD(7.9=11.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGAGGGCCAGCAGTCTC
R:
GGCAGTAAGGAGGTGGAGTCA
Band lengths:
296-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]