MmuEX0025171 @ mm10
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25901209-25903593:+
Coord C1 exon
chr2:25901209-25901358
Coord A exon
chr2:25901752-25901990
Coord C2 exon
chr2:25903359-25903593
Length
239 bp
Sequences
Splice sites
3' ss Seq
TCCAGGCCATGTCTGCTCAGATA
3' ss Score
4.13
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGAAGGACAGGAGTCTCCCGAGCAGTGGCAGCGCACGTACGGGAGGTGCTCGGGCAACGAGGTGTACCACATTCGCATGGGTGACAGTAAATTCTTCCGGGAGTATGAGGGCAAGAGCTTCACCTACGCAGCCTTCCACGCGCACAAGAA
Seq A exon
ATATGGGGTGTGCCTCATCGGGCTGAAGCGTGAGGAGAACAAGAGTATCCTGCTGAACCCAGGACCACGGCACATCCTGGCTGCCTCCGACACCTGCTTCTATATCAATATTACCAAGGAGGAGAACTCAGCTTTCATCTTCAAACAGGAGGAGAAGCAGAAGAGACGGGGCCTTGCAGGGCAGGCACTATATGAAGGGCCCTCCCGGCTCCCAGTGCATAGCATCATCGCCTCTATGG
Seq C2 exon
GGACAGTGGCCATGGACCTGCAGAACACAGATTGCCGGCCCTCCCAGGGTGGCAGTGGCGGGGACGGCACAAAGCTGACTCTGCCCACCGAGAACGGCTCTGGTAGTCGACGCCCCAGCATCGCACCCGTTCTGGAGTTGGCAGACAGCTCAGCCCTGTTGCCCTGCGACCTGCTGAGTGACCAGTCAGAGGATGAGGTGACACCCTCGGACGACGAGGGGCTCTCTGTGGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740_MULTIEX2-5/7=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.084 C2=0.618
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(47.2=100)
A:
PF0349313=BK_channel_a=PD(8.5=11.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACCACATTCGCATGGGT
R:
AGGGTGTCACCTCATCCTCTG
Band lengths:
296-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types