BtaEX6047090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103421815-103422941:+
Coord C1 exon
chr11:103421815-103421964
Coord A exon
chr11:103422225-103422463
Coord C2 exon
chr11:103422707-103422941
Length
239 bp
Sequences
Splice sites
3' ss Seq
CCGTCCGTCCGTCCCCCCAGGTA
3' ss Score
12.02
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGAAGGCCAGGACTCGCCAGAGCAGTGGCAGCGCATGTACGGACGCTGCTCGGGCAACGAGGTCTACCACGTGCGGATGGGGGACAGCAAGTTCTTCCGCGAGTACGAGGGCAAGAGCTTCACCTACGCCGCCTTCCACGCGCACAAGAA
Seq A exon
GTACGGCGTGTGCCTCATCGGCCTGAAGCGCGAGGACAATAAGAGCATCCTGCTGAACCCGGGCCCACGGCACATCCTGGCGGCCTCCGACACCTGCTTCTACATCAACATCACCAAGGAGGAGAACTCGGCCTTCATCTTCAAGCAGGAGGAAAAGCAGAAGAGGAAGGGCTTCGCGGGGCAGGGGCTGTACGAGGGCTCATCCCGCCTGCCGGTGCACAGCATCATTGCCTCCATGG
Seq C2 exon
GGACAGTGGCCATGGACCTCCAGAATACGGAGTGCCGACCCACACAGAGTGGCGGGGGCAGTGGGGGCAGCAAGCTGGCGCTCCCCACGGAGAACGGCTCAGGCAGCCGGCGGCCCAGCATCGCGCCGGTGCTGGAGGTGGCTGACAGCTCAGCCCTGCTGCCCTGCGACCTGCTGAGTGACCAGTCAGAGGACGAGATGACGCCGTCGGAGGATGAGGGGCTGTCCGTGGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'27-22,'27-21,28-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.037 C2=0.646
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(47.2=100)
A:
PF0349313=BK_channel_a=PD(8.5=11.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCTACCACGTGCGGAT
R:
GCGTCATCTCGTCCTCTGACT
Band lengths:
296-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]