DreEX0005320 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64857077-64877016:+
Coord C1 exon
chr5:64857077-64857226
Coord A exon
chr5:64871174-64871409
Coord C2 exon
chr5:64876803-64877016
Length
236 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTCACTCTTAGGTA
3' ss Score
10.84
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
AGAAGGTCAGACGTCTCCAGAACAGTGGCAGAGGACTTACGGTCGCTGCTCGGGGAATGAAGTTTATCACATCCGTTTGATGGACAGCAAGTTTTTTGGAGAATATGATGGGAAGAGTTTCACTTATGCCTCCTTCCACGCACACAAGAA
Seq A exon
GTATGGTGTGTGTCTAATCGGCACAAAGAGAGAAGACAACAAGAGCATTCTCCTGAACCCCGGCCCTCGCCACATCATGTCCGCCACAGACACCTGCTACTACATCAACATCACCAAAGAGGAGAACTCGGCCTTCATCTTCAAGCAGGAGGAGAAGCACAGTAAAGGCTTATCAGCCGCCGGCGTGTACGACGCTCCGTCTCGCCTCCCAGTGCAAAGCATCATTGCCAGCATGG
Seq C2 exon
GAACTGTGGCCATTGACCTGCAGAACCCGGATCCACCGGCTGACAGCAATAAACTGGCTCTGCCCACGGAGAACGGAGCGGGCAGCCGCAGACCCAGCATTGCCCCTGTGCTGGAGATCGCAGACTCCTCTGCCATCCTGCCCTGTGATCTCCTCAACGACCCCTCAGAAGACGAGACCAACCAATCAGATGAGGATGGAGCGCCGGCCATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868-'16-24,'16-22,18-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.090 C2=0.597
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(47.2=100)
A:
PF0349313=BK_channel_a=PD(8.5=11.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGAACAGTGGCAGAGGA
R:
CTGAGGGGTCGTTGAGGAGAT
Band lengths:
304-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]