GgaEX6015489 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8915486-8917004:-
Coord C1 exon
chr17:8916855-8917004
Coord A exon
chr17:8916521-8916759
Coord C2 exon
chr17:8915486-8915702
Length
239 bp
Sequences
Splice sites
3' ss Seq
GCGCCGTGATCCCAACACAGATA
3' ss Score
3.39
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGAGGGCCAGGAGTCCCCGGAGCAGTGGCAGAGGATGTACGGGCGCTGCTCGGGCAATGAGGTCTACCACATCCGCATGGGTGACAGCAAGTTCTTCATGGAGTACGAGGGGAAGAGCTTCACCTACGCCGCCTTCCATGCGCACAAGAA
Seq A exon
ATACGGCGTCTGCCTGATCGGCATCCGCAGGGAGGAGAACAAGAGCATCCTGCTGAACCCCGGCCCGCGGCACATCATGGCTGCGTCCGACACCTGCTTCTACATCAACATCACCAAGGAGGAGAACTCTGCCTTCATCTTCAAGCAGGCAGAGAAGCAGAAGAAGAAGGGCTTTGCAGGCAGGGGCACCTATGACGGCCCTTCCCGCCTGCCCGTGCACAGCATCATCGCCAGCATGG
Seq C2 exon
GTACAGTGGCCATGGACCTGCAGAACACTGAGTGCCGCCCCACCAACAGCAGCAAGCTGGCGCTGCCAGCAGAGAACGGCTCAGGCAACCGCCGGCCCAGCATCGCGCCTGTGCTCGAGCTGGCTGACACCTCATCCCTGCTGCCCTGCGACCTGCTCAGCGACCAGTCAGAGGATGAGATGACACAGTCAGACGAGGAGGGCTCAGCAGTGGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'18-19,'18-18,19-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.062 C2=0.452
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(47.2=100)
A:
PF0349313=BK_channel_a=PD(8.5=11.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCTACCACATCCGCAT
R:
CCTCCTCGTCTGACTGTGTCA
Band lengths:
294-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]