RnoEX6015927 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3349224-3351373:+
Coord C1 exon
chr3:3349224-3349373
Coord A exon
chr3:3349750-3349988
Coord C2 exon
chr3:3351139-3351373
Length
239 bp
Sequences
Splice sites
3' ss Seq
TCCAGGCCATGTCTGCTCAGGTA
3' ss Score
4.86
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGAAGGACAGGAGTCACCAGAGCAGTGGCAGCGCATGTACGGGCGCTGCTCGGGCAACGAGGTGTACCACATTCGCATGGGTGACAGTAAATTCTTCCGGGAGTATGAGGGCAAGAGCTTCACCTACGCAGCCTTCCACGCGCACAAGAA
Seq A exon
GTATGGGGTGTGCCTCATTGGGCTGAAACGTGAAGAGAACAAGAGTATCCTGCTGAACCCGGGGCCACGGCACATCCTGGCCGCCTCTGACACCTGCTTCTATATCAATATTACCAAGGAGGAGAACTCAGCTTTCATCTTCAAGCAGGAGGAAAAGCAGAAGAGGCGGGGCCTGGCAGGGCAGGCACTTTACGAAGGGCCCTCCCGGCTCCCAGTGCACAGCATCATCGCCTCTATGG
Seq C2 exon
GGACAGTGGCCATGGACCTGCAGAACACAGATTGCCGGCCCTCCCAGGGTGGCAGTGGTGGGGGCGGCGGCAAGCTGACTCTGCCCACTGAGAACGGCTCTGGCAGTCGGCGTCCCAGCATCGCACCCGTTCTGGAGTTGGCAGACAGCTCAGCCCTGTTGCCCTGCGACCTGCTGAGTGACCAATCAGAGGATGAGGTGACACCCTCAGACGACGAGGGGCTCTCTGTGGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-'22-35,'22-32,23-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.068 C2=0.588
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(47.2=100)
A:
PF0349313=BK_channel_a=PD(8.5=11.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACCACATTCGCATGGGT
R:
AGGGTGTCACCTCATCCTCTG
Band lengths:
296-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]