RnoEX6044509 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57403454-57409409:+
Coord C1 exon
chr13:57403454-57403624
Coord A exon
chr13:57404998-57405227
Coord C2 exon
chr13:57409196-57409409
Length
230 bp
Sequences
Splice sites
3' ss Seq
TATTCTTCTTTTAAATTAAGGTT
3' ss Score
6.68
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
GTGTGTGTGCTTGTGTTGCAGAGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAAATGAAGTCTACCACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTCCATGCACACAAAAA
Seq A exon
GTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGCATGG
Seq C2 exon
GTACTGTGGCTATAGACTTACAAGACACAAGCTGTAGAGCAGCAAGTGGCCCTACACTGGCTCTTCCTTCAGAGGGAGGCAAGGAACTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTAGCAGATACATCATCAATTCAAACCTGCGATCTTCTAAGTGACCAGTCAGAAGATGAAACTACACCAGATGAAGAAACATCTTCAAATTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'24-29,'24-27,25-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.122 C2=0.403
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(50.4=100)
A:
PF0349313=BK_channel_a=PD(8.0=11.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCAGAAGACGTATGGGA
R:
TGGTCACTTAGAAGATCGCAGG
Band lengths:
293-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]