BtaEX6067655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6542436-6557236:+
Coord C1 exon
chr16:6542436-6542585
Coord A exon
chr16:6543536-6543765
Coord C2 exon
chr16:6557023-6557236
Length
230 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTTTTAAATTAAGGTT
3' ss Score
7.7
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AGAAGGCCAGCAGTCGCCAGAACAGTGGCAGAAGATGTACGGCAGATGCTCTGGGAATGAAGTGTACCACATTGTTCTGGAAGAAAGCACATTTTTTGCTGAATATGAAGGAAAGAGCTTCACATATGCTTCTTTCCATGCACACAAAAA
Seq A exon
GTTTGGTGTCTGCTTGATTGGTATTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATATATTATGAATGCCACAGATACATGTTTTTATATTAATATTACCAAAGAAGAGAATTCAGCATTTAAAAACCACGACCATCAGAAAAAAAGCAATGTACCAAGGTCATTTTATCATGGACCGTCTAGATTGCCTGTACATAGCATAATTGCCAGCATGG
Seq C2 exon
GTACTGTGGCCATAGACTTGCAAGACACAAGCTGCAGATCAGCAAGTGGCCCTACCCTGTCTCTTCCTACAGAAGGAAGTAAAGAAGTCAGAAGACCCAGCATTGCTCCCGTTTTAGAGGTTGCAGACACGTCATCAATTCAAACATGTGATCTTCTAAGTGATCAATCAGAAGATGAAACTACACCAGATGAAGAAATGTCCTCGAACTTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.141 C2=0.472
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(47.2=100)
A:
PF0349313=BK_channel_a=PD(8.5=11.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGAATGAAGTGTACCACA
R:
CGAGGACATTTCTTCATCTGGTGT
Band lengths:
307-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]