DreEX6025915 @ danRer10
Exon Skipping
Gene
ENSDARG00000075812 | kcnt2
Description
potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
Coordinates
chr2:12259334-12263605:-
Coord C1 exon
chr2:12263456-12263605
Coord A exon
chr2:12263143-12263345
Coord C2 exon
chr2:12259334-12259535
Length
203 bp
Sequences
Splice sites
3' ss Seq
TTTTGTATCTATTATTTTAGGTA
3' ss Score
10.15
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
AGAGGGCCAGCACTCTCCTGAGGACTGGCACAGAATTTATGGCAAATGCTCAGGAAATGAAGTGTACAGTATAGTTCTGAACAAAAGCATCTTCTTTTCTGAGTATGAAGGAAACAACTTTGCTTATGCATCATTTAACGCATATAATAA
Seq A exon
GTATGGCATCTGTCTCATTGGAGTCTGTCCTGAGGACACTAAGAGCATTCTGCTGAATCCTGGTGCTCAGTATACCATGAATGCCATGGACACGTGCTTCTATATCAGTCTCACCAAGGAGGAAAACTCCTATGTTAAGCAGAGAGAGTGTGGAAACAACAGCAAGACTCAACCGCCAATGGGGAGTGCCATTACAAGACCAG
Seq C2 exon
GGACCATGGCCATAGATATACAGGAAATAAGCATTCCATCCAGTTTAGAACCATCGCTCTCAACTGGAGCTAATACATCTGAGAGAAGACAACCAATCATTATTCCTGTTCTAGAACTGCCTGATTCACCTTCTTTTCAGGCTAGCAAGCTACTCAGTGGTCAGTCAAAGAGTCACATAAATGGAGATGAAAGCAATGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075812-'14-16,'14-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.316 C2=0.272
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(46.2=100)
A:
PF0349313=BK_channel_a=PD(8.5=13.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTCTCCTGAGGACTGG
R:
ACTGACCACTGAGTAGCTTGC
Band lengths:
308-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]