MmuEX0027468 @ mm10
Exon Skipping
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123499873-123502289:-
Coord C1 exon
chr4:123502164-123502289
Coord A exon
chr4:123500753-123500758
Coord C2 exon
chr4:123499873-123500025
Length
6 bp
Sequences
Splice sites
3' ss Seq
AATCATGCTCCCGGGGACAGGCA
3' ss Score
3.97
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TTCTTCAGTGATGCCCGAGACCTGGAGTCATTTCTGAGAAACCTCCAAGACTCCATCAAACGAAAATATACCTGCGACCGCAGCACCAGTCTGTCCCGCCTGGAGGATCTGCTTCAGGACTCCATG
Seq A exon
GCACAG
Seq C2 exon
GATGAAAAGGAGCAGCTTATTCAGTCCAAGAGTTCCGTTGCCAGTCTTGTTGGGAGATCAAAAACCATTGTTCAGCTAAAGCCACGCAATCCAGACCATGTGCTGAAGAGCACTTTATCTGTGAAGGCCATCTGTGACTACCGGCAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.001
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000084301fB2327
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAATATACCTGCGACCGC
R:
GCAACGGAACTCTTGGACTGA
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types