GgaEX0029074 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5645841-5647708:+
Coord C1 exon
chr23:5645841-5645966
Coord A exon
chr23:5646168-5646173
Coord C2 exon
chr23:5647556-5647708
Length
6 bp
Sequences
Splice sites
3' ss Seq
AATCATGCTCCCGGGGACAGGCA
3' ss Score
3.97
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TTCTTCAGCGATGCCCGCGAGTCGGAGACGTACCTGCGCAACCTGCAGGACTCCATCAGAAGGAAGTATTCCTGCGACCACAGCACGAGCCTGACGCGGCTGGAGGACCTGCTGCAGGACTCCATG
Seq A exon
GCACAG
Seq C2 exon
GATGAGAAGGAACAGCTCATCCAGTCAAAGAGCTCTGTCGCCAGCCTGGTGGGACGGTCCAAGAGCATCGTTCAGCTCCGGCCCAGGAACCCAGAGCACCTGGTGAAGAGCACCATCCCCATCAAGGCTGTGTGTGACTATCGGCAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTCCTGCGACCACAGC
R:
GCGACAGAGCTCTTTGACTGG
Band lengths:
104-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]