BtaEX0021014 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107324436-107326978:-
Coord C1 exon
chr3:107326853-107326978
Coord A exon
chr3:107325584-107325589
Coord C2 exon
chr3:107324436-107324588
Length
6 bp
Sequences
Splice sites
3' ss Seq
AATCATGCTCCCGGGGACAGGCA
3' ss Score
3.97
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TTCTTCAGTGATGCTCGAGACCTGGAGTCATTCTTGAGGAACCTCCAAGATTCCATCAAACGGAAGTATTCCTGCGACCACAGCACCAGCTTATCCCGCCTGGAGGACCTGCTGCAGGACTCCATG
Seq A exon
GCACAG
Seq C2 exon
GATGAAAAGGAGCAGCTTATACAATCCAAGAGTTCCGTTGCCAGTCTTGTTGGGAGATCAAAATCCGTTGTTCAGCTAAAACCACGCAGTCCTGACCACATGCTAAAGAGCACCATATCCGTGAAAGCCATCTGTGACTACAGGCAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024-MICROEX3
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000033270fB4006
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTCCTGCGACCACAGC
R:
TGGCAACGGAACTCTTGGATT
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development