GgaEX0029074 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5331198-5332532:+
Coord C1 exon
chr23:5331198-5331323
Coord A exon
chr23:5331525-5331530
Coord C2 exon
chr23:5332380-5332532
Length
6 bp
Sequences
Splice sites
3' ss Seq
AATCATGCTCCCGGGGACAGGCA
3' ss Score
3.97
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TTCTTCAGCGATGCCCGCGAGTCGGAGACGTACCTGCGCAACCTGCAGGACTCCATCAGAAGGAAGTATTCCTGCGACCACAGCACGAGCCTGACGCGGCTGGAGGACCTGCTGCAGGACTCCATG
Seq A exon
GCACAG
Seq C2 exon
GATGAGAAGGAACAGCTCATCCAGTCAAAGAGCTCTGTCGCCAGCCTGGTGGGACGGTCCAAGAGCATCGTTCAGCTCCGGCCCAGGAACCCAGAGCACCTGGTGAAGAGCACCATCCCCATCAAGGCTGTGTGTGACTATCGGCAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000005857fB3675
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTCCTGCGACCACAGC
R:
GCGACAGAGCTCTTTGACTGG
Band lengths:
104-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]