HsaEX0037159 @ hg19
Exon Skipping
Gene
ENSG00000127603 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:13664]
Coordinates
chr1:39763292-39766034:+
Coord C1 exon
chr1:39763292-39763417
Coord A exon
chr1:39764924-39764929
Coord C2 exon
chr1:39765882-39766034
Length
6 bp
Sequences
Splice sites
3' ss Seq
AATCATGCTCCCGGGGACAGGCA
3' ss Score
3.97
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TTCTTCAGTGATGCACGAGAGCTGGAGTCATTCTTGAGGAACCTCCAAGATTCCATTAAACGAAAATATTCCTGTGACCACAACACCAGCTTATCCCGCCTTGAAGACCTGCTCCAGGACTCCATG
Seq A exon
GCACAG
Seq C2 exon
GATGAAAAGGAGCAGCTTATACAGTCCAAGAGTTCCGTTGCCAGTCTCGTTGGGAGATCAAAAACCATCGTTCAGCTAAAACCACGCAGTCCAGACCATGTGTTAAAGAACACCATTTCTGTCAAGGCTGTCTGTGACTACAGGCAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127603-MICROEX3
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACCACAACACCAGCTT
R:
GCAACGGAACTCTTGGACTGT
Band lengths:
96-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)