RnoEX0051761 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141181377-141183763:-
Coord C1 exon
chr5:141183638-141183763
Coord A exon
chr5:141182257-141182262
Coord C2 exon
chr5:141181377-141181529
Length
6 bp
Sequences
Splice sites
3' ss Seq
AATCATGCTCCCGGGGACAGGCA
3' ss Score
3.97
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TTCTTCAGCGATGCTCGAGACCTGGAGTCATTTCTGAGAAACCTACAAGACTCCATCAAACGAAAATATACCTGCGACCACAACACCAGTCTGTCCCGCCTTGAGGATCTGCTACAGGACTCCATG
Seq A exon
GCACAG
Seq C2 exon
GATGAAAAGGAGCAGCTTATACAGTCCAAGAGTTCCGTTGCCAGTCTTGTTGGGAGATCAAAAACCATTGTTCAGCTAAAGCCACGCAATCCAGACCATGTGTTGAAGAGCACTTTATCTGTGAAGGCCATCTGTGACTACCGACAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000084109fB8239
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCACAACACCAGTCTGTC
R:
GCAACGGAACTCTTGGACTGT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]