MmuEX0036979 @ mm9

Exon Skipping

Gene

ENSMUSG00000029913 | Prdm5

Description

PR domain containing 5 [Source:MGI Symbol;Acc:MGI:1918029]

Coordinates

chr6:65851768-65886367:+

Coord C1 exon

chr6:65851768-65851853

Coord A exon

chr6:65877911-65878015

Coord C2 exon

chr6:65885964-65886367

Length

105 bp

Sequences

Splice sites

3' ss Seq

TCTCTTCCCTTTACCTGCAGGAG

3' ss Score

11.94

5' ss Seq

GACGTGAGT

5' ss Score

9.22

Exon sequences

Seq C1 exon

GTGAGCGCCCCTATCAATGCCCGTACTGTGAAAAAGGTTTCAGTAAAAATGACGGACTGAAGATGCACATTCGTACTCACACCAGG

Seq A exon

GAGAAGCCCTACCAGTGCTCAGAGTGCAGCAAGGCCTTCAGCCAGAAGCGGGGCCTCGATGAACACAAGAGGACACACACAGGAGAAAAGCCTTTTCAGTGTGAC

Seq C2 exon

GTATGTGACTTGGCTTTTAGCCTGAAGAAAATGCTTATTCGACACAAGATGACACACAATCCTAACCGTCCGATGGCAGAGTGCCATTTCTGCCATAAGAAGTTTACAAGAAATGACTACCTCAAAGTGCACATGGACAACATCCATGGGGTAGCTGACAGCTAAGAGGAGCGGCAAGGAACCACACCATGTGAAAGAGCTTCTACTATGAATCCCAGATTCTTCTCACCTGATCGGCTTAACAGAAATAGCCACAAAGGATTCATTGATCTGACAGTGTTTATGTGCCTATCTTTGTAATCTATAGATGCAAAAAAAATCCTTTTACCAAAAATAAATTCAAAATAGAAAACAATAATACTTTGTAGATTACAGAGTATTCTGGCTGATTAAAAATTAAATAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000029913-'25-22,'25-20,26-22

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.136 A=0.200 C2=0.093

Domain overlap (PFAM):

C1:

PF156161=TerY-C=PD(35.1=89.7),PF042167=FdhE=PD(21.7=51.7),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5),PF0013017=C1_1=PU(11.8=20.7)

A:

PF134651=zf-H2C2_2=PD(53.8=40.0),PF0013017=C1_1=FE(66.7=100),PF134651=zf-H2C2_2=PU(68.0=48.6),PF051298=Elf1=PU(31.9=62.9)

C2:

PF0013017=C1_1=PD(15.7=14.5),PF134651=zf-H2C2_2=PD(24.0=10.9),PF051298=Elf1=PD(65.2=81.8),PF0009621=zf-C2H2=WD(100=41.8)

Main Inclusion Isoform:

ENSMUSP00000031976