DreEX0058024 @ danRer10
Exon Skipping
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:1916207-1934893:-
Coord C1 exon
chr23:1934808-1934893
Coord A exon
chr23:1928061-1928165
Coord C2 exon
chr23:1916207-1917406
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACCTCTCCTTCTCTTTCAGGAA
3' ss Score
12.55
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GTGAGCGGCCGTATCAGTGTCCCTACTGTGACAAAGCCTTCAGCAAGAACGACGGGCTAAAAATGCACATTCGCACACACACCCGG
Seq A exon
GAAAAGCCATATAAATGCAGCGAGTGCAACAAGGCCTTCAGTCAGAAGCGCGGGCTGGACGAGCACATGCGCACACACACCGGAGAGAAGCCCTTTCAGTGCGAC
Seq C2 exon
GTGTGTGACCTGTCCTTCAGTTTAAAGAAGATGTTGATCAGACACAAACTCACCCATAATCCCAACAGGCCGATGGCTGAGTGCTCCCTGTGCCACAAGAAGTTCACCCGCAACGACTACCTCAAAGTGCACATGGAGAACGTCCACGGAGAGACGGAGGGATAAACTACCATACACTACACATGCACACTTAAGGGATCGTTCACGCAGAAATGACTTTCTTTCTCCAGTAGAACACTGCAGTAGTGAACAGGTTTATTAGATTGAATTAAACGCATACAAAATGAGTCCAAATCAATAGCCACGGCTTCTGATGACACACTGAGGTCGTGTGAAGCGAAATGATCACTGTGTGCAAAAAATTGAACATTATTTACAATATTATACGCTTTGATCTACAGTGTGAATATACTCAGGTTGTAGTCTGATTGCTTTGATTACAAGTGTTTGAGCAGGCTGCAGGTTAAAGCTAATGATATTGTGAATAATGTTCAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.171 C2=0.167
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(53.8=40.0),PF134651=zf-H2C2_2=PU(68.0=48.6)
C2:
PF134651=zf-H2C2_2=PD(24.0=10.9),PF0009621=zf-C2H2=WD(100=41.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGTATCAGTGTCCCTACT
R:
TTATCCCTCCGTCTCTCCGTG
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]