BtaEX0028363 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4670307-4743136:+
Coord C1 exon
chr6:4670307-4670392
Coord A exon
chr6:4728380-4728484
Coord C2 exon
chr6:4742972-4743136
Length
105 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTTCCCTGACTGCAGGAG
3' ss Score
6.71
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGAGCGTCCCTATCAGTGCCCTTACTGTGAGAAAGGATTCAGTAAAAATGACGGCCTGAAGATGCACATTCGTACTCACACCAGG
Seq A exon
GAGAAGCCATACAAGTGCTCAGAGTGCGGCAAGGCCTTCAGCCAGAAGCGCGGCCTGGACGAGCACACGAGGACACACACCGGGGAGAAGCCTTTCCAGTGCGAC
Seq C2 exon
GTTTGTGACTTGGCTTTTAGCCTGAAGAAAATGCTGATCCGACACAAGATGACTCATAATCCCAATCGTCCGCTGGCAGAATGCCAGTTTTGCCATAAGAAGTTTACAAGGAATGACTACCTCAAAGTGCACATGGACAATATCCATGGGGAGGCTGACAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111-'26-23,'26-22,27-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.171 C2=0.074
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(53.8=40.0),PF134651=zf-H2C2_2=PU(68.0=48.6)
C2:
PF134651=zf-H2C2_2=PD(24.0=10.9),PF0009621=zf-C2H2=WD(100=41.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCCTATCAGTGCCCTTA
R:
CTGTCAGCCTCCCCATGGATA
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development