GgaEX1045918 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55836878-55854028:+
Coord C1 exon
chr4:55836878-55836963
Coord A exon
chr4:55848436-55848540
Coord C2 exon
chr4:55853732-55854028
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGTCATTTCATACAGGAA
3' ss Score
9.12
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTGAGCGTCCTTACCAGTGTCCTTACTGTGACAAAGCTTTCAGCAAGAATGATGGACTGAAGATGCATATTCGCACCCACACAAGG
Seq A exon
GAAAAGCCATACCAATGTTCTGAGTGTAACAAGGCTTTCAGTCAAAAACGAGGCCTCGATGAGCACATGAGAACCCACACCGGAGAGAAGCCGTTTCAGTGTGAT
Seq C2 exon
GTTTGTGATTTGTCCTTCAGCCTGAAGAAAATGCTGATTCGACACAAGCTGACTCATAATCCCAATCGACCAATGGCAGAATGCCAGCTTTGCCACAAGAAGTTTACAAGAAATGACTACCTCAAAGTGCACATGGAAAATGTCCATGGTGAAACTGACAGCTAATTATAATGTATGAGAAGAATGGATCTCATGTTCCAAAGTGTTCCACTTGTATGTGTACATACTCCAGACTTCTCACCTGACTAGTAGACATAGTCAGGAGAAACAACTGTGTTTGCATGTTATTTTTCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.171 C2=0.185
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(53.8=40.0),PF134651=zf-H2C2_2=PU(68.0=48.6)
C2:
PF134651=zf-H2C2_2=PD(24.0=10.9),PF138941=zf-C2H2_4=WD(100=41.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTCCTTACCAGTGTCCTT
R:
GCTGTCAGTTTCACCATGGACA
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]