MmuEX6020177 @ mm10
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:115952452-115968085:+
Coord C1 exon
chr5:115952452-115952649
Coord A exon
chr5:115961144-115961197
Coord C2 exon
chr5:115967888-115968085
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCGCACCTCTTGCCTTTCAGGCA
3' ss Score
9.1
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTCAGCCTGGAGCACGAGGAGCAGAAGCTGGAGCTGAAGCGGCAGCTCACGGAGCTGCAGCTGTCCCTGCAGGAGCGCGAGTCCCAGCTGACGGCCCTGCAGGCCGCCCGGGCAGCGCTGGAGAGCCAGCTCCGCCAGGCGAAGACAGAGCTGGAGGAGACAACCGCGGAAGCGGAGGAGGAGATCCAGGCGCTCACG
Seq A exon
GCACATCGAGATGAGATCCAGCGCAAATTCGATGCCCTTCGCAACAGCTGCACG
Seq C2 exon
GTCATCACCGACCTGGAGGAGCAGCTGAACCAGCTCACCGAGGACAACGCCGAGCTCAACAACCAAAACTTCTACCTGTCCAAACAACTCGATGAGGCTTCCGGGGCCAATGACGAGATTGTGCAGCTGCGGAGTGAGGTGGACCATCTCCGCCGTGAGATCACGGAGCGGGAGATGCAGCTCACCAGCCAGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=0.056 C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0149614=V_ATPase_I=PU(40.8=97.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCGAAGACAGAGCTGGAG
R:
GTTTTGGTTGTTGAGCTCGGC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types