RnoEX0021378 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46371684-46388402:-
Coord C1 exon
chr12:46388205-46388402
Coord A exon
chr12:46378377-46378430
Coord C2 exon
chr12:46371684-46371881
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATGTACCTCTTACCTTTTAGGCA
3' ss Score
9.61
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTCAGCCTGGAGCATGAGGAGCAGAAGCTGGAGCTGAAGCGGCAGCTCACGGAGCTGCAGCTGTCCCTGCAGGAGCGTGAGTCCCAGCTGACGGCCCTGCAGGCCGCCCGGGCTGCCCTTGAGAGCCAGCTCCGCCAGGCGAAGACGGAGCTGGAGGAGACAACTGCAGAAGCGGAGGAGGAGATCCAGGCACTCACG
Seq A exon
GCACATCGAGATGAAATCCAGCGCAAATTCGATGCCCTTCGCAACAGCTGTACT
Seq C2 exon
GTCATCACCGACCTGGAGGAGCAGCTGAACCAGCTCACCGAGGACAACGCCGAGCTCAACAACCAAAACTTCTACCTGTCCAAACAACTCGATGAGGCTTCGGGTGCCAACGATGAGATTGTGCAGCTGCGAAGCGAGGTGGACCATCTCCGCCGTGAGATCACGGAGCGGGAGATGCAGCTCACCAGCCAGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-'47-37,'47-36,49-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.056 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0149614=V_ATPase_I=PU(40.8=97.0)
Main Skipping Isoform:
ENSRNOT00000086716fB3138
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGACAACTGCAGAAGCG
R:
CCGAAGCCTCATCGAGTTGTT
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]