MmuEX6020177 @ mm9
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:116402461-116418094:+
Coord C1 exon
chr5:116402461-116402658
Coord A exon
chr5:116411153-116411206
Coord C2 exon
chr5:116417897-116418094
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCGCACCTCTTGCCTTTCAGGCA
3' ss Score
9.1
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTCAGCCTGGAGCACGAGGAGCAGAAGCTGGAGCTGAAGCGGCAGCTCACGGAGCTGCAGCTGTCCCTGCAGGAGCGCGAGTCCCAGCTGACGGCCCTGCAGGCCGCCCGGGCAGCGCTGGAGAGCCAGCTCCGCCAGGCGAAGACAGAGCTGGAGGAGACAACCGCGGAAGCGGAGGAGGAGATCCAGGCGCTCACG
Seq A exon
GCACATCGAGATGAGATCCAGCGCAAATTCGATGCCCTTCGCAACAGCTGCACG
Seq C2 exon
GTCATCACCGACCTGGAGGAGCAGCTGAACCAGCTCACCGAGGACAACGCCGAGCTCAACAACCAAAACTTCTACCTGTCCAAACAACTCGATGAGGCTTCCGGGGCCAATGACGAGATTGTGCAGCTGCGGAGTGAGGTGGACCATCTCCGCCGTGAGATCACGGAGCGGGAGATGCAGCTCACCAGCCAGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-'38-36,'38-35,39-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=0.055 C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0149614=V_ATPase_I=PU(40.8=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCGAAGACAGAGCTGGAG
R:
GTTTTGGTTGTTGAGCTCGGC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: