BtaEX0009086 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57938342-57954510:+
Coord C1 exon
chr17:57938342-57938539
Coord A exon
chr17:57948069-57948122
Coord C2 exon
chr17:57954313-57954510
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCAACTTCTTACCTTTTAGGCA
3' ss Score
9.02
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTCAGTCTAGAACATGAAGAGCAGAAACTGGAGCTCAAACGCCAGCTCACAGAGCTGCAGCTCTCCCTGCAGGAGCGTGAATCCCAGCTGACAGCCCTGCAGGCAGCACGGGCGGCCCTGGAGAGCCAGCTCCGCCAGGCCAAGACGGAGCTGGAAGAGACGACAGCAGAAGCAGAAGAAGAGATCCAGGCGCTTACG
Seq A exon
GCACATAGAGATGAAATCCAGCGCAAATTCGATGCCCTTCGTAACAGCTGTACT
Seq C2 exon
GTGATCACGGACTTGGAGGAGCAGCTAAACCAGCTGACGGAGGACAATGCCGAGCTCAACAACCAAAACTTCTACTTGTCTAAACAACTCGATGAGGCCTCTGGTGCCAACGACGAGATTGTGCAGCTGCGAAGTGAAGTGGACCATCTCCGCCGCGAGATCACTGAGAGGGAGATGCAGCTCACTAGCCAGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=0.074 C2=0.611
Domain overlap (PFAM):
C1:
NO
A:
PF0149614=V_ATPase_I=PU(0.1=0.0)
C2:
PF0149614=V_ATPase_I=PU(40.8=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGAGATCCAGGCGCT
R:
CAATCTCGTCGTTGGCACCAG
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development