GgaEX0010454 @ galGal3
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9873243-9885113:+
Coord C1 exon
chr15:9873243-9873440
Coord A exon
chr15:9876185-9876238
Coord C2 exon
chr15:9884916-9885113
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAACTTCTTACCTCCTTTAGGCA
3' ss Score
7.86
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTGGTCTAGAGCACGAAGAACAGAAGCTGGAACTCAAAAGACAGTTGACAGAATTGCAGCTGACACTCCAGGAGCGGGAATCTCAAATTACTGGGCTGCAGGCTGCACGGACAGCCCTGGAGAATCAGCTCCGTGAGGCCAAAACTGAACTAGAGGAGACCACAGCTGAGGCAGAGGAAGAGATTCAAGCTCTCACG
Seq A exon
GCACATAGAGATGAAATCCAGCGTAAATTTGAAGCCCTTCGTAATAGCTGCACA
Seq C2 exon
GTGATTACAGATTTGGAAGAGCAGCTGAACCAGCTCAGTGAAGACAACGCAGAACTGAACAATCAGAATTTCTTCCTGTCCAAACAACTTGATGAGGCCTCAGGGGCCAATGATGAAGTTGTCCAGTTGCGGAGTGAAGTTGACCATCTCCGTCGAGAGATCACTGAGCGAGAGATGCAGCTTACCAGTCAGAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354_CASSETTE6
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.111 C2=0.470
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0149614=V_ATPase_I=PU(39.6=92.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGAGGCAGAGGAAGAGA
R:
CCCTGAGGCCTCATCAAGTTG
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]