DreEX0002545 @ danRer10
Exon Skipping
Gene
ENSDARG00000088825 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr8:3806334-3825154:+
Coord C1 exon
chr8:3806334-3806531
Coord A exon
chr8:3811861-3811914
Coord C2 exon
chr8:3824957-3825154
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTTTTTTTCAAGGCC
3' ss Score
9.92
5' ss Seq
GCGGTATGC
5' ss Score
7.62
Exon sequences
Seq C1 exon
ATCGGCCTAGAGCATGAGGAACAGAAGCTGGAGATCAAGCGTCAGGTGTCGGAGCTCACGTTGTCTCTGCAGGAGAGAGAAGCTCAGATCAGCAGCCTGCAAGCGGCACGCCACGCTCTCGACAGCCAACTACAGCAGGCCAAAACTGAGCTGGAGGAGACCACCGCCGAGGCCGAAGAGGAGATCACCGTCCTGAGG
Seq A exon
GCCCATCGGGATGAAATCCAACGCAAGTTTGATGCCCTGCGAGACAGCTGTGCG
Seq C2 exon
GTGATCACGGATCTGGAGGAGCAGTTGACGCAGCTCACGCAAGAAAACGCGGAGCTGAACCGGCAGAACTTCTACCTGTCCAAACAGCTGGACGAGGCCACAGACGAGAACGAGGAGCGCCTGCAGCTCAAGCAGGACGTGGAGCGCCTCAGGAGAGAGGTGGCAGACCGAGAGATGCACCTCAACAACCAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088825-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.000 C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079896=Microtub_assoc=PU(92.8=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACAGCCAACTACAGCAG
R:
GTTCAGCTCCGCGTTTTCTTG
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]