HsaEX0015432 @ hg38
Exon Skipping
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119735160-119752247:-
Coord C1 exon
chr12:119752050-119752247
Coord A exon
chr12:119742411-119742464
Coord C2 exon
chr12:119735160-119735357
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCAACTTCTTACCTTTTAGGCA
3' ss Score
9.02
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTCAGTCTAGAGCACGAGGAGCAGAAACTGGAGCTCAAGCGCCAGCTCACAGAGCTACAGCTCTCCCTGCAGGAGCGCGAGTCACAGTTGACAGCCCTGCAGGCTGCACGGGCGGCCCTGGAGAGCCAGCTTCGCCAGGCGAAGACAGAGCTGGAAGAGACCACAGCAGAAGCTGAAGAGGAGATCCAGGCACTCACG
Seq A exon
GCACATAGAGATGAAATCCAGCGCAAATTTGATGCTCTTCGTAACAGCTGTACT
Seq C2 exon
GTAATCACAGACCTGGAGGAGCAGCTAAACCAGCTGACCGAGGACAACGCTGAACTCAACAACCAAAACTTCTACTTGTCCAAACAACTCGATGAGGCTTCTGGCGCCAACGACGAGATTGTACAACTGCGAAGTGAAGTGGACCATCTCCGCCGGGAGATCACGGAACGAGAGATGCAGCTTACCAGCCAGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966_MULTIEX3-20/25=19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=0.055 C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0149614=V_ATPase_I=PU(13.5=52.8),PF079267=TPR_MLP1_2=PU(11.9=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGATCCAGGCACTCAC
R:
TGTACAATCTCGTCGTTGGCG
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development