MmuEX6020189 @ mm10
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:115873852-115885069:+
Coord C1 exon
chr5:115873852-115873994
Coord A exon
chr5:115875889-115875979
Coord C2 exon
chr5:115884866-115885069
Length
91 bp
Sequences
Splice sites
3' ss Seq
AGGCTGTGACCTTCTCACAGAGA
3' ss Score
5.38
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTCATGGAATATCAGCCTGGAGGGGATTTGCTGTCGCTTCTGAACAGATACGAGGACCAATTAGATGAGAGCATGATCCAGTTTTACCTTGCTGAGCTGATTTTGGCTGTCCACAGCGTGCACCAGATGGGATATGTGCATCG
Seq A exon
AGACATCAAGCCCGAGAACATCCTCATCGACCGGACGGGACACATCAAGCTGGTGGATTTTGGATCAGCCGCTAAGATGAATTCAAATAAG
Seq C2 exon
GTGGATGCCAAACTCCCCATTGGGACCCCGGATTACATGGCTCCGGAAGTGTTGACCGTGATGAACGAGGACCGAAGGGGCACATACGGCTTGGACTGTGACTGGTGGTCTGTCGGAGTTGTTGCTTATGAGATGGTTTATGGGAAGACCCCATTCACAGAGGGAACCTCCGCCCGGACCTTCAACAACATCATGAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.9=100)
A:
PF0006920=Pkinase=FE(11.4=100)
C2:
PF0006920=Pkinase=FE(25.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTTGCTGTCGCTTCTGA
R:
CTTCCGGAGCCATGTAATCCG
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types