RnoEX6064775 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46453913-46465561:-
Coord C1 exon
chr12:46465419-46465561
Coord A exon
chr12:46463432-46463522
Coord C2 exon
chr12:46453913-46454116
Length
91 bp
Sequences
Splice sites
3' ss Seq
CGGGACCTTCTTTCTCACAGAGA
3' ss Score
7.67
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTCATGGAGTATCAGCCTGGAGGGGATTTGCTGTCTCTTCTGAATAGATATGAGGACCAGTTAGATGAAAACATGATTCAGTTTTACCTTGCTGAGCTGATCTTGGCTGTCCACAGCGTGCACCAGATGGGATATGTGCATCG
Seq A exon
AGACATCAAGCCGGAGAACATCCTCATTGACCGAACGGGACACATCAAGCTGGTGGATTTTGGATCAGCCGCTAAGATGAATTCAAATAAG
Seq C2 exon
GTGGATGCCAAACTCCCTATTGGGACCCCAGATTACATGGCTCCGGAAGTGTTGACTGTGATGAACGAGGACCGAAGGGGCACCTACGGCCTGGACTGTGACTGGTGGTCTGTCGGAGTGGTTGCCTATGAGATGCTTTACGGGAAGACCCCATTCACGGAGGGAACCTCCGCCCGGACCTTCAACAACATCATGAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-'11-8,'11-7,12-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.9=100)
A:
PF0006920=Pkinase=FE(11.4=100)
C2:
PF0006920=Pkinase=FE(25.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGATCTTGGCTGTCCAC
R:
ATAGGCAACCACTCCGACAGA
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]