DreEX0002783 @ danRer10
Exon Skipping
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2323497-2328711:-
Coord C1 exon
chr5:2328569-2328711
Coord A exon
chr5:2325774-2325867
Coord C2 exon
chr5:2323497-2323703
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTCTCTTTTCTCAGAGA
3' ss Score
10.62
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
GTGATGGAGTATCTGCCCGGCGGAGACCTCATGGCTCTGATGAACAGATATGAAGATCAGTTTGATGAATCTATGGCTCAGTTTTACCTGGCCGAGCTCATACAGGCCGTTCACACACTCCATCAGATGGGATACGTTCACAG
Seq A exon
AGATATTAGACCAGAGAATGTGCTGATCGACCGCACGGGTCACATTAAACTGGCAGACTTTGGATGGGCAGCGAGACTGACTGCTAACCGAACG
Seq C2 exon
GTGACGTCCTCCAAACTCCCGGTGGGACCTCCAGACTTTCTGGCCCCTGAGATCCTTTCGGCGTTCAGCGGAGGGTCCGCATGCAACCACGGCCCTGAAAGCGACTGGTGGTCTCTGGGGGTCATCGCTTATGAAATGATCTACATGAAATCACCTTTCACTGACGGCACGTCCACAAAAACCATCAACAACATCATCAACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856-'8-9,'8-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(11.7=100)
C2:
PF0006920=Pkinase=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCATACAGGCCGTTCAC
R:
TAAGCGATGACCCCCAGAGAC
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]