BtaEX6072769 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57854464-57865047:+
Coord C1 exon
chr17:57854464-57854606
Coord A exon
chr17:57855478-57855571
Coord C2 exon
chr17:57864844-57865047
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGGCCTTGATTTCCATACAGAGA
3' ss Score
5.58
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
GTCATGGAATATCAGCCTGGAGGGGATTTGCTGTCACTTTTGAATAGATATGAGGACCAATTAGATGAAAATATGATTCAGTTTTACCTAGCTGAACTGATTTTGGCTGTCCACAGCGTTCATCAGATGGGCTATGTACATCG
Seq A exon
AGACATCAAGCCCGAGAACATCCTCATTGACCGAACGGGACACATCAAGCTGGTGGATTTTGGATCAGCTGCTAAAATGAACTCAAATAAGATG
Seq C2 exon
GTAAATGCCAAACTCCCGGTTGGTACTCCAGATTACATGGCCCCTGAAGTGTTGACTGTGATGAATGGGGATGGAAAAGGTGCCTATAGCCTAGACTGTGATTGGTGGTCAGTGGGAGTTATTGCTTATGAGATGGTTTATGGAAGATGCCCATTCACTGAAGGAACCTCAGCCAAAACCTTCAATAACATCATGAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963-'13-11,'13-9,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=FE(12.1=100)
C2:
PF0006920=Pkinase=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATATCAGCCTGGAGGGG
R:
ATCTGGAGTACCAACCGGGAG
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]