GgaEX1015546 @ galGal3
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9835519-9838326:+
Coord C1 exon
chr15:9835519-9835661
Coord A exon
chr15:9836721-9836814
Coord C2 exon
chr15:9838123-9838326
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTTCTTGCTTACAGAGA
3' ss Score
8.68
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTTATGGAGTACCAGCCTGGAGGGGACTTGCTGTCACTCCTAAACCGGTACGAGGACCAACTAGATGAGAGTATGGTGCAGTTTTATCTTGCAGAGCTGGTTCTAGCCATTCACAGTGTCCACCAGATGGGTTATGTACACCG
Seq A exon
AGATATCAAACCAGAGAATGTTCTTATTGACCGGACAGGACACATTAAACTGGTAGACTTTGGGTCAGCTGCCAAAATGACAGTAAACAAAATG
Seq C2 exon
GTAAATGCCAAGCTACCTGTTGGCACCCCTGATTACATGGCACCAGAAATGTTAACAGGGTTGAATGGTGATGGCAAAGCTTCTTATGGTCCAGAGTGTGACTGGTGGTCCTTGGGAGTCATCGCGTATGAAATGATTTATGGAAGATCTCCGTTCACTGAAGGAACTTCAGCAAAAACTTTTAATAACATCATGAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.8=100)
A:
PF0006920=Pkinase=FE(11.7=100)
C2:
PF0006920=Pkinase=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCAGAGCTGGTTCTAGCC
R:
GATGACTCCCAAGGACCACCA
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]