MmuEX6026472 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93281652-93282988:+
Coord C1 exon
chr1:93281652-93281765
Coord A exon
chr1:93282269-93282382
Coord C2 exon
chr1:93282692-93282988
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATGTTATTTCCCCCCTCAGTGA
3' ss Score
8.25
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGGTGGATGCCTGTGCCTCCAGCCCCTGCCAGCACGGAGGCCGGTGTGAGGACGGTGGTGGGGCCTACCTGTGCGTGTGTCCAGAGGGCTTCTTTGGCTACAACTGTGAGACAG
Seq A exon
TGAGTGACCCCTGCTTCTCTAGCCCCTGTGGGAGCCGCGGCTACTGCTTGGCCAGCAACGGGTCCCACAGCTGTACCTGCAAAGTGGGCTACACAGGCAAGGACTGCACCAAAG
Seq C2 exon
AGCTCCTCCCACCAACAGCCCTCAGGGTAGAAAGGGTGGAGGAGAGTGGGGTCTCCATCTCCTGGAGTCCACCCGAGGGCACCACGGCCAGGCAGGTGCTGGATGGCTATGCAGTCACCTATGCCTCCTCGGATGGATCGTCCCGGCGCACAGACTTTGTGGACCGGAGCCGCTCCTCTCACCAGCTTCGGGCCCTAGCAGCCGGCCGCGCCTACAATATCTCCGTTTTCTCAGTCAAGAGAAACACAAACAACAAAAATGACATCAGCAGGCCTGCAGCACTGCTCACCCGCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'35-41,'35-39,37-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.221
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0004116=fn3=WD(100=85.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGGCTTCTTTGGCTAC
R:
GGAGATATTGTAGGCGCGGC
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types