RnoEX0084315 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100421483-100422857:+
Coord C1 exon
chr9:100421483-100421596
Coord A exon
chr9:100422133-100422246
Coord C2 exon
chr9:100422561-100422857
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTGTTATTTCCCCCATTAGTGA
3' ss Score
5.92
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGGTGGATGCCTGTGCCTCCAGCCCCTGCCAGCACGGAGGCCGGTGTGAGGACGGTGGTGGGGCCTACCTGTGCGTGTGTCCAGAGGGCTTCTTCGGCTACAACTGTGAGACAG
Seq A exon
TGAGTGACCCCTGCTTCTCTAGCCCCTGTGGGGGCCGCGGCTACTGCTTGGCCAGCAACGGGTCCCACAGCTGTACCTGCAAAGTGGGCTACACAGGCAAGGACTGCACCAAAG
Seq C2 exon
AGCTCCTCCCACCAACAGCCCTCAGGGTAGAAAGGGTGGAGGAGAGTGGGGTCTCCATCTCCTGGAGCCCACCCGAGGGCACCACGGCCAGACAGGTGCTGGACGGCTATGCAGTCACCTATGCCTCCTCGGATGGATCGTCCAGGCGCACGGACTTTGTGGACCGGAGCCGCTCCTCTCACCAGCTTCGGGCCCTGGCAGCCGGCCGTGCCTACAACATCTCTGTTTTCTCAGTCAAGAGAAACACTAACAACAAAAATGACATCAGCAGGCCTGCAGCCCTGCTCACCCGCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5),PF0004116=fn3=PU(2.4=5.1)
C2:
PF0004116=fn3=PD(96.4=85.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCTTCTTCGGCTACAAC
R:
CAGAGATGTTGTAGGCACGGC
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]