GgaEX6045719 @ galGal3
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
NA
Coordinates
chr9:5944819-5945875:+
Coord C1 exon
chr9:5944819-5944932
Coord A exon
chr9:5945032-5945145
Coord C2 exon
chr9:5945579-5945875
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTCTCACTCCTGTTCTGCAGCCA
3' ss Score
7.46
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AAGTGGACGCCTGTGAGTCAGACCCTTGTCAGAATGGAGGGGAGTGTGAAGGTGATGGAGGTTCCTACCTGTGTGTGTGCCCAGAGGGTTTCTTTGGTTACCACTGTGAGACAG
Seq A exon
CCAGTGACCCGTGCTTCTCCAGCCCATGTGGGAGCCGAGGCTACTGCCTGCCCAGCAATGGCACCCACAGCTGCACCTGCAAAGTGAGCTACACAGGCAAGAGCTGCGAAAAAG
Seq C2 exon
AATTGCTGCCACCAACCTCATTAAAGGTGGAAAGGGTGGAGGACACTGGTGTGTTGATTTCTTGGCACCCTCCTGAGGACGCAGCCGCCAGGCAACTCATTGACGGCTACGCCGTGACGTACGTATCCTTCGACGGCTCTTACCGCAGGACAGATTTTGTGGACCGAAGTCGTTCTGCCCACCAATTGCGGGCACTAGCCTCCGGCAGAGCCTACAATATTTCTGTCTTTTCAGTCAAACGCAACGTGAACAACAAGAATGATATCAGCAGGCCTGTCATGCTCACCACGCGCACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'27-23,'27-22,28-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.120
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0004116=fn3=WD(100=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGGAGTGTGAAGGTGAT
R:
TCCACAAAATCTGTCCTGCGG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]