MmuEX6061313 @ mm9
Exon Skipping
Gene
ENSMUSG00000000325 | Arvcf
Description
armadillo repeat gene deleted in velo-cardio-facial syndrome [Source:MGI Symbol;Acc:MGI:109620]
Coordinates
chr16:18400178-18402828:+
Coord C1 exon
chr16:18400178-18400346
Coord A exon
chr16:18401660-18401731
Coord C2 exon
chr16:18402701-18402828
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTACCACCCTTCTGTTTCAGGGA
3' ss Score
10.45
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
TCAGTAGAGAACTGTGTGTGCATCATGCGGAACCTGTCCTACCACGTGCACAAAGAAGTTCCAGGGGCTGACAGGTACCAGGAGGCAGAGCCTGGGATCCCGGGCAGCACAACCTCCCAGCGACGGAGGAAGGATGACGCCAGCTGCTTTGGTGGCAAGAAAGCAAAAG
Seq A exon
GGAAGAAGGATGCAGAGATGGACCGGAACTTTGACACACTGGACCTGCCTAAACGAACGGAGGCTGCAAAAG
Seq C2 exon
GCTTCGAGCTGCTGTACCAGCCGGAGGTGGTACGTCTCTACCTCTCACTCCTTACGGAGAGCCGGAACTTCAACACCCTGGAAGCTGCAGCCGGTGCCCTGCAAAACCTCAGTGCTGGCAACTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000325-'17-22,'17-21,21-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=0.263 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
PF136461=HEAT_2=PU(12.9=48.0)
C2:
PF136461=HEAT_2=FE(45.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTACCACGTGCACAAAG
R:
GTAGAGACGTACCACCTCCGG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: