GgaEX1009278 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1061838-1088838:-
Coord C1 exon
chr15:1088667-1088838
Coord A exon
chr15:1082785-1082856
Coord C2 exon
chr15:1061838-1061965
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGTTTTTTTGCACAGGAA
3' ss Score
8.52
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TCCGTGGAGAATTGTGTGTGCATCATGAGGAACCTTTCCTATCATGTCCACAAAGAGGTCCCCGGAGCTGATAAGTACCAAGAACTTGATGCTGGTCAGACTGCGGGCACGGGAGGCTCTCAGAAAAAGAAGAAAGATGATGCTGGTTGTTTCGGTGGAAAGAAAGCTAAAG
Seq A exon
GAAAGAAGAATGGAGATTTGGACAGGAGTTTTGATACACTTGATTTGCCGAAGCGGTCTGAGACAGCAAAAG
Seq C2 exon
GCTTTGAATTACTGTACCAACCAGATGTGGTCCGACTGTACCTCTCCATCCTCACCGAAAGTCAGAACTTTAACACTCTGGAAGCTGCAGCGGGGGCTTTGCAGAATCTCAGTGCTGGCAACTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX4-5/5=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(4.9=8.0)
C2:
PF0051418=Arm=PD(92.7=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGGAGCTGATAAGTACCA
R:
CGGTGAGGATGGAGAGGTACA
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]