MmuEX6061313 @ mm10
Exon Skipping
Gene
ENSMUSG00000000325 | Arvcf
Description
armadillo repeat gene deleted in velo-cardio-facial syndrome [Source:MGI Symbol;Acc:MGI:109620]
Coordinates
chr16:18400085-18402735:+
Coord C1 exon
chr16:18400085-18400253
Coord A exon
chr16:18401567-18401638
Coord C2 exon
chr16:18402608-18402735
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTACCACCCTTCTGTTTCAGGGA
3' ss Score
10.45
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
TCAGTAGAGAACTGTGTGTGCATCATGCGGAACCTGTCCTACCACGTGCACAAAGAAGTTCCAGGGGCTGACAGGTACCAGGAGGCAGAGCCTGGGATCCCGGGCAGCACAACCTCCCAGCGACGGAGGAAGGATGACGCCAGCTGCTTTGGTGGCAAGAAAGCAAAAG
Seq A exon
GGAAGAAGGATGCAGAGATGGACCGGAACTTTGACACACTGGACCTGCCTAAACGAACGGAGGCTGCAAAAG
Seq C2 exon
GCTTCGAGCTGCTGTACCAGCCGGAGGTGGTACGTCTCTACCTCTCACTCCTTACGGAGAGCCGGAACTTCAACACCCTGGAAGCTGCAGCCGGTGCCCTGCAAAACCTCAGTGCTGGCAACTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000325-'25-38,'25-29,30-38=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.539 A=0.276 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF136461=HEAT_2=PU(12.9=48.0)
C2:
PF136461=HEAT_2=FE(45.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTACCACGTGCACAAAG
R:
GTAGAGACGTACCACCTCCGG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types