RnoEX0011989 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86739622-86742352:-
Coord C1 exon
chr11:86742181-86742352
Coord A exon
chr11:86740715-86740786
Coord C2 exon
chr11:86739622-86739749
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTGCCACCCTTCCGTTCCAGGGA
3' ss Score
9.76
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCAGTAGAGAACTGTGTGTGCATCATGCGGAACCTGTCCTACCACGTGCACAAGGAAGTTCCAGGGGCTGACAGGTACCAGGAGGTGGAGCCTGGGATCCCGGGCAGTGCTGCAACCTCCCAGCGTCGGAGGAAGGATGACGCCAGCTGCTTTGGTGGCAAGAAAGCGAAAG
Seq A exon
GGAAGAAGGATGCAGAGGCCGACCGGAACTTTGACACATTGGACCTGCCCAAACGTACTGAAGCTGCGAAAG
Seq C2 exon
GCTTCGAGCTGCTGTACCAGCCGGAGGTGGTGCGACTTTACCTGTCACTCCTTACGGAGAGCCGGAACTTCAACACCCTAGAAGCTGCAGCGGGTGCCCTGCAGAACCTCAGTGCTGGCAACTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-'21-19,'21-18,26-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=0.327 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF136461=HEAT_2=PU(13.8=52.0)
C2:
PF136461=HEAT_2=FE(44.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCACAAGGAAGTTCCAG
R:
CAGGTAAAGTCGCACCACCTC
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]