BtaEX6074408 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74932568-74934521:-
Coord C1 exon
chr17:74934504-74934521
Coord A exon
chr17:74933557-74933628
Coord C2 exon
chr17:74932568-74932695
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCACTGCCCTTTTGTTCCAGGGA
3' ss Score
10.09
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AAGAGTGGTTCCATCAAG
Seq A exon
GGAAGCGGGATGGAGAGATGGACCAGAACTCGGACACCCTGGACCTGCCCAAGCGCACTGAGGCTGCCAAGG
Seq C2 exon
GCTTCGAGCTGCTGTACCAGCCCGAGGTGGTGCGTCTCTACCTGTCCCTCCTGACGGAGAGCCGCAACTTCAACACCCTGGAGGCCGCGGCCGGCGCCCTGCAGAACCTCAGCGCCGGGAACTGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473-'9-18,'9-14,12-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.720 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
PF136461=HEAT_2=PU(14.7=56.0)
C2:
PF136461=HEAT_2=FE(44.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]