DreEX0015030 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25689038-25730172:-
Coord C1 exon
chr5:25730001-25730172
Coord A exon
chr5:25722522-25722593
Coord C2 exon
chr5:25689038-25689165
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTTCTTCACTTAGGGA
3' ss Score
9.87
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TCTGTGGAAAACTGTGTTTGCATCATGAGGAACCTGTCGTACCATGTACACAAGGAGGTTCCAGGAGCTGAGAAGTTTCAGGACCCGTCGGCTCTACAGGCCCCCGGCTCTGCTGGCACTCAGAGGAAGAAGAAAGATGATGCAGGCTGTTTCGGCGGAAAGAAAGCCAAAG
Seq A exon
GGAGGAAAAACGGAGAGCATGACAAAAACTATGACACGTTGGACCTCCCCAAGCGCACAGAGCCCACTAAAG
Seq C2 exon
GTTTCGAGTTACTGTATCAGCCGGAGGTGGTTCGACTCTACCTGTCCCTGCTGACTGAGAGCCAGAACTACAACACGCTAGAAGCAGCAGCCGGTGCTCTGCAGAACCTCAGCGCTGGACAGTGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688_MULTIEX4-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=0.600 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0051418=Arm=PU(2.5=4.0)
C2:
PF136461=HEAT_2=PU(31.1=74.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTTCCAGGAGCTGAGAA
R:
GTCAGCAGGGACAGGTAGAGT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]