MmuEX6067490 @ mm9
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79481435-79486328:-
Coord C1 exon
chr9:79486254-79486328
Coord A exon
chr9:79483197-79483336
Coord C2 exon
chr9:79481435-79481558
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTTCTTTTTTCAGTAT
3' ss Score
10.84
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGTGAAACCAACAGAGGCTCCTACAGAACCACCCACGCCTTCTCCTCCTCCCACTATTCCACCTGCCCGTGATG
Seq A exon
TATGCAAAGGGGCCAAGGCAGATATTGTGTTCTTGACGGATGCCTCTTGGAGTATTGGAGATGACAATTTTAACAAAGTTGTAAAATTTATCTTTAATACTGTGGGGGCCTTTGATGAAGTCAACCCTGCTGGGATTCAG
Seq C2 exon
GTTTCTTTTGTGCAGTACAGTGATGAGGTCAAGTCTGAATTCAAGCTGAACACATACAACGATAAAGCTCTAGCCCTCGGAGCCCTCCAGAACATTCGCTACAGAGGAGGAAACACAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'46-44,'46-43,47-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(22.4=83.0)
C2:
PF0009223=VWA=FE(23.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAACCAACAGAGGCTCC
R:
TCTTGTGTTTCCTCCTCTGTAGC
Band lengths:
194-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: