RnoEX6036672 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87075636-87079348:-
Coord C1 exon
chr8:87079274-87079348
Coord A exon
chr8:87077154-87077293
Coord C2 exon
chr8:87075636-87075759
Length
140 bp
Sequences
Splice sites
3' ss Seq
TATTTTCCTTTTTTTTTCAGTAT
3' ss Score
9.33
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CTGTGAAACCAACAGAGGCTCCCACAGAACCGCCCACGCCTTCACCTCCTCCCACTATCCCACCTGCCCGTGATG
Seq A exon
TATGCAAAGGGGCCAAGGCAGATATTGTGTTCCTGACGGATGCCTCTTGGAGTATTGGAGATGACAATTTTAACAAAGTTGTAAAATTTATTTTTAATACTGTGGGGGCCTTTGATGAAATCAGCCCTGCTGGGATTCAG
Seq C2 exon
GTTTCTTTTGTGCAGTACAGTGATGAGGTCAAGTCTGAATTCAAGCTGAACACATACAACGATAAGGCTCTAGCCCTTGGAGCCCTCCAGAACATTCGGTACAGAGGAGGAAACACAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'62-69,'62-68,63-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(22.4=83.0)
C2:
PF0009223=VWA=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCAACAGAGGCTCCCAC
R:
TGTTCTTGTGTTTCCTCCTCTGT
Band lengths:
194-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]